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For your convenience, a reference video is available on the TrenzElectronic's Channel at YouTube.
For further reference, please read Xilinx XAPP974: Indirect Programming of SPI Serial Flash PROMs with Spartan-3A FPGAs and this discussion (in particular for TE0630 Spartan 6 module) on the Xilinx forum.

Warning

Direct SPI configuration using iMPACT GUI is no longer available from version 12 of iMPACT.

 

To indirect program SPI Flash using Xilinx iMPACT do following steps:

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