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For your convenience, a reference video is available on the TrenzElectronic's Channel at YouTube.
For further reference, please read Xilinx XAPP974: Indirect Programming of SPI Serial Flash PROMs with Spartan-3A FPGAs and this discussion (in particular for TE0630 Spartan 6 module) on the Xilinx forum.

Warning

Direct SPI configuration using iMPACT GUI is no longer available from version 12 of iMPACTis supported only up to Xilinx iMPACT version 11.

 

To indirect program SPI Flash using Xilinx iMPACT do following steps:

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