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And this is HOW the LED was made to blink. Lets look closer how it was done.

Step 1: Hardware Design

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I have dropped Xilinx Microblaze MCS onto the Block design. all the Interface ports to the real hardware (clock, reset and LED) are connected automatically using Vivado Board Interface flow. So for making this hardware design, there is nothing to look in any documents, just select the Board to work with, and go. All constraints are managed by Vivado.