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When using XMOD-JTAG in JB1 then additionally USB UART is usable, and the push-button on XMOD works as configuration reset.
When using XMOD-JTAG please check the switch settings on XMOD to be sure the power and I/O reference are supplied correctly. TE0790 can in some case be used to power up TE0725, this is however not recommended. TE0790-01 has not enough power for TE0725 (LED Blink may work, for larger designs the XMOD delivered power may be not sufficient).
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