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It is not allowed to feed any voltage to any external I/O pin before there is no power indication on M3.3VOUT pins. Presence of 3.3V on B2B JB2 connector pins 9 and 11 indicates that module is properly powered up and ready. The 1.8V voltage-level on base-board for supplying PL I/O bank supply-voltages will be available after the module's 3.3V voltage-level has reached stable state on the B2B JB2 connector pins 9 and 11.
If VCCIOA or VCCIOC will be powered through the dedicated pins of external connector J6, then corresponding VCCIO jumpers J10 and J12 should be removed.
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